Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
1SW7 Chain:B ((4-246))
-RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSAD-TEVVCGAPSIYL-DFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWS--KVVLAYEPVWAIGTGNSSTPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKP-EFVDIINA--
General information:
TITO was launched using:
RESULT:
Template:
1SW7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93316 for 2105 contacts (-44.3/contact) +
2D Compatibility (PS) -26609 + (NN) -11914 + (LL) 1268
1D Compatibility (HY) -17200 + (ID) 5250
Total energy: -153021.0 ( -72.69 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1SW7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SW7-query.scw
PDB file :
Tito_Scwrl_1SW7.pdb
: