Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
2C9Y Chain:A ((17-228))
IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEYYRKRGIHSAIDASQTPDVVFAS---ILAAF
General information:
TITO was launched using:
RESULT:
Template:
2C9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78169 for 1558 contacts (-50.2/contact) +
2D Compatibility (PS) -23272 + (NN) -17887 + (LL) 360
1D Compatibility (HY) -16000 + (ID) 4500
Total energy: -139468.0 ( -89.52 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_2C9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C9Y-query.scw
PDB file :
Tito_Scwrl_2C9Y.pdb
: