Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTIGCDHGGRRLKDAIVKHLREKDIEVVDIGTYTDESVDFPSYAEEVANQVVSGQSELGILCCGTGIGMSIAANKVDGIRAAVVSDTFSARATREHNNSNILCLGERVIGEGLALLLVDTWLEASFAGDRHKRRLDKITELERK
2VVR Chain:A ((2-147))
KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEGGRHQQRVEAITAIEQR
General information:
TITO was launched using:
RESULT:
Template:
2VVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95955 for 1198 contacts (-80.1/contact) +
2D Compatibility (PS) -16057 + (NN) -9151 + (LL) 0
1D Compatibility (HY) -14000 + (ID) 3550
Total energy: -138713.0 ( -115.79 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_2VVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVR-query.scw
PDB file :
Tito_Scwrl_2VVR.pdb
: