Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQVAWYVPAAKKTHKTAVVVHGFANSKENMKAYGWLFHKLGYNVLMPDNIAHGESHGQLIGYGWNDRENIIKWTEMIVDKNPSSQITLFGVSMGGAT-VMMASGEKLPSQVVNIIEDCGYSSVWD--E-----L-KF---QAKEMYG---------LPAFPLLY-------E-----VSTIS-KI----RAGF----SYGQASSVEQLKKNNLPALFIHGDKDNFVPTSMVYDNYKATAGKKELYIVKGAKHAKSFETEPEKYEKRISSFLKKYEK |
| 1A88 Chain:A ((8-275)) | ------------------------------------------------------------------------GTNIFYKDWGPR--DGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHD---MDTYAADVAALTEALDLRGAVHIGHSTGGGEVARYVAR-AEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTDDQVVPYADAAPKSAELLANATLKSYEGLPHGML-STHPEVLNPDLLAFVKS--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57683 for 1905 contacts (-30.3/contact) +
2D Compatibility (PS) -24366 + (NN) -13180 + (LL) 6864
1D Compatibility (HY) -1600 + (ID) 2050
Total energy: -92015.0 ( -48.30 by residue)
QMean score : 0.411
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