Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIQAAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPDMAKDDEH--SAHTDRRYASLDDSV--IPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFEFDEKLNLVSEY-YLGK
2H4Z Chain:A ((5-236))
--KLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDENLRAVGPHQFLGD
General information:
TITO was launched using:
RESULT:
Template:
2H4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74530 for 1878 contacts (-39.7/contact) +
2D Compatibility (PS) -24435 + (NN) -3918 + (LL) 400
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -127083.0 ( -67.67 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2H4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4Z-query.scw
PDB file :
Tito_Scwrl_2H4Z.pdb
: