Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MYHIELKKEALLPRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSIKG----IGQVKSVE-IKAMLELAKRIHKAE----YDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMDTQNRIIEQRT---------------------IFI---------GTVRRSVAEPREILHYACKNMATSLIIIHNHPSGSPNPSESDLSFTKKIKRSCD-HLGIVCLDHIIVGKNKYYSFREEADIL-------------------------------------- |
| 2A8J Chain:A ((41-416)) | GGFVLVHAGAGYHSESKAKEYKHVCKRACQKAIEKLQAGALATDAVTAALV---ELEDSPFTNAGMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLGRIPPCFLVGEGAYRWAVDHGIPSCPTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQAEDAHQALLETMQNKFISSPFLASEDGVLGGVIVLRS--CLLVEFLWSHTTESMCVGYMSAQDGKAKTHISRLPPGAVAGQSVAIEGGVCRLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2A8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46115 for 1870 contacts (-24.7/contact) +
2D Compatibility (PS) -23130 + (NN) 698 + (LL) 436
1D Compatibility (HY) -3200 + (ID) 1200
Total energy: -72511.0 ( -38.78 by residue)
QMean score : 0.216
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