Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGQYDITGKACIMGILNVTPDSFSDGGSYTTIDSALNQVGEMLEQGVAIVDIGGESTRPGAVFVTAEEEIKRVVPMIKAIREVYPDLLLSIDTYKTEVAQAALDAGVHILNDVWSGLYDGKMLSLAAERNVPIILMHNQEEAVYQDIKKEVCEFLLERAERALEAGVSKDNIWIDPGFGFAKTEEQNLELLKGLEQVCDLGYPVLFGISRKRTVNYLLGGNREVTERDMGTAALSAWAIAKGCQIVRVHNVEVNKDIVTVISQLV
2DZB Chain:B ((28-281))
----------RVRLLGVLNLTPD----------PERALERAREMVAEGADILDLGAEST-------PVEEEKRRLLPVLEAVLSL--GVPVSVDTRKPEVAEEALKLGAHLLNDV-TGLRDERMVALAARHGVAAVVMHMPAHARYRDVVAEVKAFLEAQARRALSAGVPQ--VVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGE-LSGVEDPAQRVHGSVAAHLFAVMKGVRLLRVHDVRAHREALGVWEALY
General information:
TITO was launched using:
RESULT:
Template:
2DZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175043 for 1942 contacts (-90.1/contact) +
2D Compatibility (PS) -25518 + (NN) -15167 + (LL) 924
1D Compatibility (HY) -18800 + (ID) 4950
Total energy: -238554.0 ( -122.84 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_2DZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DZB-query.scw
PDB file :
Tito_Scwrl_2DZB.pdb
: