Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYFLDTADVSEIRRLNRLGIVDGVTTNPTIISRE---GRDFKEVINEICQIVDGPVSAEVTGLTCDEMVTEAREIAKWSPNVVVKIPMTEEGLAAVSQLSKEGIKTNVTLIFTVAQGLSAMKAGATFISPFVGRLEDIGTDAYALIRDLRHIIDFYGFQSEIIAASIRGLAHVEGVAKCGAHIATIPDKTFASLFTHPLTDKGIETFLKDWDSFKKK
3S1V Chain:C ((1-212))
MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPD
General information:
TITO was launched using:
RESULT:
Template:
3S1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148961 for 1715 contacts (-86.9/contact) +
2D Compatibility (PS) -22950 + (NN) -5902 + (LL) 0
1D Compatibility (HY) -23200 + (ID) 5450
Total energy: -206463.0 ( -120.39 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_3S1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S1V-query.scw
PDB file :
Tito_Scwrl_3S1V.pdb
: