Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNNTIETILNHRSIRSFT-DQLLTAEEIDTLVKSAQAASTSSYVQAYSIIGVSDPEKKRELSVLAGNQPYVEKNGHFFVFCADLYRHQQLAEEKGEHISE--LLENTEMFMVSLIDAALAAQNMSIAAESMGLGICYIGGIRNELDKVTEVLQT-PDHVLPLFGLAVGHP--ANLSGKKPRLPKQAVYHENTYNVNTDDFRHTMNTYDKTISDYYRERTNGKREETWSDQILNFMKQKPRTYLNDYVKEKGFNKN
1BKJ Chain:A ((2-240))-NNTIETILAHRSIRKFTA-VPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAGNQAYVESAAEFLVFCIDYQRHATINP--------DVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLG-LPENSAVLFGMCLGHPDQ--NPEVKPRLPAHVVVHENQYQELN---LDDIQSYDQTMQAYY---------STWSQEVTGKLAGESRPHILPYLNSKGLAKR


General information:
TITO was launched using:
RESULT:

Template: 1BKJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 868 -29085 -33.51 -129.84
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.82

3D Compatibility (PKB) : -33.51
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.497

(partial model without unconserved sides chains):
PDB file : Tito_1BKJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1BKJ-query.scw
PDB file : Tito_Scwrl_1BKJ.pdb: