Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR-------------------------------GRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALGK
1AKE Chain:B ((1-182))
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1AKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43692 for 1125 contacts (-38.8/contact) +
2D Compatibility (PS) -16534 + (NN) -12569 + (LL) 2684
1D Compatibility (HY) -14800 + (ID) 3700
Total energy: -88611.0 ( -78.77 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1AKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AKE-query.scw
PDB file :
Tito_Scwrl_1AKE.pdb
: