Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWY--LWRHYLVANVEPNDGHRAIAAWQDHAEV-SVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCG--VPYTDALPEMPEPAIEVEPPVCDCGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
3U3D Chain:A ((47-261))
-HVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISSDY---EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECPCGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMS-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3U3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96816 for 1626 contacts (-59.5/contact) +
2D Compatibility (PS) -23059 + (NN) -14525 + (LL) 2672
1D Compatibility (HY) -18400 + (ID) 3500
Total energy: -153628.0 ( -94.48 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_3U3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U3D-query.scw
PDB file :
Tito_Scwrl_3U3D.pdb
: