Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSADLTAHARIREAAIEQFGRHGFG-VGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALK---SNDPTTWLAQMA----EIESYAPLMAYLV--RSMQSGG---ELAKMLWQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQMHENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
2GFN Chain:A ((5-199))
--VDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLRNITASILPLDERRLAMTRVFLFFYAEG---TARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALVALTDGLALQAILDPVVM------KAISAEDAAARCVDAAVRR-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2GFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78995 for 1288 contacts (-61.3/contact) +
2D Compatibility (PS) -19820 + (NN) -11091 + (LL) 2768
1D Compatibility (HY) 2000 + (ID) 1550
Total energy: -106688.0 ( -82.83 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_2GFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFN-query.scw
PDB file :
Tito_Scwrl_2GFN.pdb
: