Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL
4D0S Chain:A ((3-269))
--GLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD--RLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRT---------ALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL
General information:
TITO was launched using:
RESULT:
Template:
4D0S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174736 for 2146 contacts (-81.4/contact) +
2D Compatibility (PS) -27848 + (NN) -14424 + (LL) 1232
1D Compatibility (HY) -34400 + (ID) 12800
Total energy: -262976.0 ( -122.54 by residue)
QMean score : 0.850
(partial model without unconserved sides chains):
PDB file :
Tito_4D0S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D0S-query.scw
PDB file :
Tito_Scwrl_4D0S.pdb
: