Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRVVVIGSGFAGLWAALGAARRLDELAVLAGTVDVMVVSNKPFHDIRVRN-YEADLSA------CRIPLGDVLGPAGVAHVTA-EVTAIDADGRRVTTST-----GASYSYDRLVLASGSHVVKPALPGLA-EFGFDVDTYDGAVRLQQHLQGLAGGPLTSAAATVVVVGAGLTGIETACELPGRLHALFARGDGVTPRVVLIDHNPFVGS-DMGLSARPVIEQALLDNGVETRTGVSVAAVSPGG---VTLSSGERLAAATVVWCAGMRAS-RLTEQLPVARDRLGRLQVDDYLRVIGVPAMFAAGDVAAARMDD--EHLSVMSCQHGRPMGRYAGCNVINDLFDQPLLALRIPWYVTVLDLGSAGAVYTEGWERKVVSQGAPAKTTKQSINTRRIYPPLNGSRADLLAAAAPRVQPRP |
| 1NHP Chain:A ((1-316)) | -MKVIVLGSSHGGYEAVEELLNLH-------PDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV-------DPEVNNVVVIGSGYIGIEAAEAFAKAG-----------KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLK-GTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEP----------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NHP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209360 for 2397 contacts (-87.3/contact) +
2D Compatibility (PS) -31806 + (NN) -6889 + (LL) 6664
1D Compatibility (HY) -10000 + (ID) 3150
Total energy: -254541.0 ( -106.19 by residue)
QMean score : 0.388
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