Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPT-DHRAAQVGTEHL-AADLLVALDRNHARLLRQL-GVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
3ROF Chain:A ((4-156))
-QGMVDVAFVCLGNICRSPMAEAIMRQRLKDRNI-HDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFE--ATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNME---ESDVPDPYYTN--NFEGVYDMVLSSCDNLIDYIVKDANL----
General information:
TITO was launched using:
RESULT:
Template:
3ROF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95903 for 1249 contacts (-76.8/contact) +
2D Compatibility (PS) -16397 + (NN) -9309 + (LL) -288
1D Compatibility (HY) -13600 + (ID) 2300
Total energy: -137797.0 ( -110.33 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_3ROF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ROF-query.scw
PDB file :
Tito_Scwrl_3ROF.pdb
: