Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANASETNVGPMAPRVCVVGSVNMDLTFVVDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAAAQLRAHLRANAVGLDRTV-TVPGPSGTAIIVVDASAENTVLVAPGANAHLTPVP----S-AVANCDVLLTQLEIPVATALAAARAAQSADAVVMVNASPAGQDRSSLQDLAAIADVVIANEHEANDWPS-------------------PPTHFVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVFAGVLAANWPRNPGSPAERLRALRRACAAGALATLVSGVGDCAPAAAAIDAALRANRHNGS |
| 1RKD Chain:A ((4-307)) | ------------AGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNPAPARE---LPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLE-E---KPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDR------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144493 for 2566 contacts (-56.3/contact) +
2D Compatibility (PS) -31890 + (NN) -23748 + (LL) -88
1D Compatibility (HY) -9600 + (ID) 4900
Total energy: -214719.0 ( -83.68 by residue)
QMean score : 0.486
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