Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPAPSPDARAVVTGASQNIGAALATELAARGHHLIVTARREDVLTELAARLADKYRVTVDVRPADLADPQERSKLADELAAR--PISILCANAGTATFGPIASLDLAGEKTQVQLNAVAVHDLTLAVLP--GMIERKAGGILISGSAAGNSPIPYNATYAATKAFVNTFSESLRGELRGSGVHVTVLAPGPVRTELPDASEASLVEKLVPDFLWISTEH-----TARVSLNALERNKMRVVPGLTSKAMSVASQYAPRAIVAPIVGAFYKRLGGS
4DC1 Chain:B ((29-244))
-----------ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM-----AASVREHFSDIWEVSTEEAFDRITARVPIG--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120840 for 1636 contacts (-73.9/contact) +
2D Compatibility (PS) -22733 + (NN) -9718 + (LL) 3436
1D Compatibility (HY) -11600 + (ID) 3500
Total energy: -164955.0 ( -100.83 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_4DC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DC1-query.scw
PDB file :
Tito_Scwrl_4DC1.pdb
: