Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDS--EDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVR-NQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGA-----NLFELENFVAREVDVAPAASGAPHAAGGRL
3WNW Chain:A ((28-194))
----QNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHLCDFIETYYLSEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDKHTLG-------------------
General information:
TITO was launched using:
RESULT:
Template:
3WNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58209 for 1203 contacts (-48.4/contact) +
2D Compatibility (PS) -17861 + (NN) -15158 + (LL) 1228
1D Compatibility (HY) -8000 + (ID) 1900
Total energy: -99900.0 ( -83.04 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3WNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WNW-query.scw
PDB file :
Tito_Scwrl_3WNW.pdb
: