Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLS-EDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
4DR9 Chain:A ((19-163))
---LDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLEL----PPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDKKGFAVQAV
General information:
TITO was launched using:
RESULT:
Template:
4DR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76063 for 1057 contacts (-72.0/contact) +
2D Compatibility (PS) -14575 + (NN) -3698 + (LL) 620
1D Compatibility (HY) -14800 + (ID) 3650
Total energy: -112166.0 ( -106.12 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_4DR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR9-query.scw
PDB file :
Tito_Scwrl_4DR9.pdb
: