Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFFEQGKGANVTVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRGKRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEGPFDLIVNGTSASLAGDV-PPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAARTLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLATV
2D5C Chain:A ((1-261))
MLRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQV-EGRLFGFNTDAPGFLEAL-KAGGIP-LKGPALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFGL----RAVPL-EKAREARLLVNATRVGLEDPSASPLPAELFPE-EGAAVDLVYRPLWTRFLREAKAKGL-KVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARRAL---
General information:
TITO was launched using:
RESULT:
Template:
2D5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127550 for 2389 contacts (-53.4/contact) +
2D Compatibility (PS) -27816 + (NN) -10031 + (LL) 1360
1D Compatibility (HY) -14000 + (ID) 4700
Total energy: -182737.0 ( -76.49 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_2D5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5C-query.scw
PDB file :
Tito_Scwrl_2D5C.pdb
: