Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADALDSLRLMRTQERPAQVFVRGQGSWLWDSDGRAFLDFTQGLAVNCLGHSPSVLVQALARQARELVSAGPGLLNRPVL-----ALAQRLC-LATGS-DQAYFLTSGAEANEAAIALARKWGRLHRGGAQRIVSTVNSIHGRTPGTLTACGKPAQHG-----LEGFARVPFNDLDAMAAAIDEETV-AVMLEPVQGDAGVIPATLDYLRGIERLCRQRGVLLILDEVQTGIGRCGALLAEELYGVRADIVTLGKGLGAG-VPLSALLARGN--ACCFEPGDQL----GTHHGNALMTAAGLAVLNTVLEPGFLEQVREQGTHLRDGLARVARRYGH-GPLRGQGLFWGLPLIGQRAPAVVRAAFGEGLLINAPQPHCLRFSPALTVSRANVDEMLRRLERALARVANRHEEVA |
| 4PPM Chain:A ((407-740)) | ----VDFLKLQRCD----NVFRSAAGTQLYDDAGEAFLDMVAGYGCLNLGHNPQPVVNALKNY---LDAQGPNFIQYISIPEQTAKLAEVLCRLAPGNMGRVFFSNSGTEAVEAAMKIAKA-----STGKPGIAYLRNSYHGKTLGALSITGRDKHRRYFTPLLDAMVEVPFGDLAALREALNREDVGALMIEPIQGEGGVHIPPAGYLQAVQQLCRETGVLLMVDEVQTGLGRTGKLFACEWDGIEPDVLMLSKSLSGGLIPIGATLCRADLWQKAYGTADRFLVHSSTYGGGNLASVVALSALREILAQDLVGHAERMGAYFKQALSEIAARYPFVSEVRGRGLMLGI---------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168123 for 2569 contacts (-65.4/contact) +
2D Compatibility (PS) -34636 + (NN) -22423 + (LL) 6572
1D Compatibility (HY) -25600 + (ID) 5850
Total energy: -250060.0 ( -97.34 by residue)
QMean score : 0.433
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