Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVAHRLLFSLTALLAATAQAAVDGQKLYTQGGANPAAAACVTCHGADGMGLAAAGFPRLAGLPAAYLSKQLHDLKQGGSREHPVMKGIADALGDDEIQALANTLAAMPAPKPVELSRVATPRSPGETLAVRGAWERNIPECVTCHGPAGSGVG--EAFPPLQGQGEMYLSNQLRAWQLGTRRNDPNDLMGH----IAKSLSEEEIRSVSQFFATLGQAGGQP
3VRD Chain:A ((1-174))
-----------------------------EPTAEML-ANNCAGCHGTRGNSAGP-ASPSIAQMDPAVFVEVMEQFKSGE-IQSTIMGRIAKGYSTADFQKMAEYFKQQTYQPVKQ-SFDKALVAKGTKLHD--------KYCEKCHVESGKPLADQDEYHILAGQWTPYLRYAIEDFRAERRPM--EKKMASKLKELLKAEGEDGLDALFAFYASQQ------
General information:
TITO was launched using:
RESULT:
Template:
3VRD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23147 for 1251 contacts (-18.5/contact) +
2D Compatibility (PS) -18594 + (NN) -12094 + (LL) 3692
1D Compatibility (HY) -6800 + (ID) 1700
Total energy: -58643.0 ( -46.88 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_3VRD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VRD-query.scw
PDB file :
Tito_Scwrl_3VRD.pdb
: