Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKEIINVVHGTFTQLRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVYEKHDLLISGPGKNPDYNYYRVAGMAIAGKPKGAAQNEAEPINVKSLLP
1FDN Chain:A ((6-51))
-----------------------------------------------------------EACISCGACEPECPVNAIS-----SGDDRYV-----IDADTCIDCGACAGVCPVDA-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1FDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35680 for 258 contacts (-138.3/contact) +
2D Compatibility (PS) -4774 + (NN) -1748 + (LL) 8452
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -38350.0 ( -148.64 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_1FDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDN-query.scw
PDB file :
Tito_Scwrl_1FDN.pdb
: