Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQKIVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRSSIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDLVVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDMLGFGIMKQF--EYPVFFDVTHALQMPGGRADSAGGRRAQVTDLAKAGLSQKLAGLFLEAHPDPEHAKCDGPCALRLNKLEAFLSQLKQLDELIKSFPAIETA
3FYP Chain:B ((3-277))
-----IKINDITLGNNSPFVLFGGICVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQ---------GGRRAQALDLALAGMATRLAGLFLESH-----------------LLEDFLIRIKALDDLIKSQPIL---
General information:
TITO was launched using:
RESULT:
Template:
3FYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169736 for 2018 contacts (-84.1/contact) +
2D Compatibility (PS) -27350 + (NN) -14316 + (LL) 1288
1D Compatibility (HY) -32800 + (ID) 8700
Total energy: -251614.0 ( -124.68 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_3FYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FYP-query.scw
PDB file :
Tito_Scwrl_3FYP.pdb
: