Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQ----AEALKDAGVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
4QBH Chain:B ((1-188))
MNLVLMGLPGAGKGTQAERIVEAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLGKDDCERGFLLDGFPRTVAQAEALEEILEEIGRPIDYVIHIEVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEETVAKRLEVNMKQMKPLLDFYEQ-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QBH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61600 for 1346 contacts (-45.8/contact) +
2D Compatibility (PS) -19774 + (NN) -9306 + (LL) 2132
1D Compatibility (HY) -16000 + (ID) 4700
Total energy: -109248.0 ( -81.16 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_4QBH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QBH-query.scw
PDB file :
Tito_Scwrl_4QBH.pdb
: