Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRIAVVGAAGRMGKNLIEAVQQTGGAAGLTAAVDRPDSTLVGADAGELAGLGRIGVPLSGDLGKVCEEFDVLIDFTHPSVTLKNIEQCRKARRAMVIGTTGFSADEKLLLAEAAKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEIIEAHHRHKVDAPSGTALRMGEVVAQALGRDLQEVAVYGREGQTGARARETIGFATVRAGDVVGDHTVLFAAEGERVEITHKASSRMTFARGAVRAALWLEGKENGLYDMQDVLGLR
3QY9 Chain:A ((3-243))
SMKILLIGY-GAMNQRVARLAEEKG--HEIVGVIENTPKT---------------PYQQYQHIADV-KGADVAIDFSNPNLLFPLL--DEDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLDD-FDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENV---TPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL----
General information:
TITO was launched using:
RESULT:
Template:
3QY9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152623 for 1850 contacts (-82.5/contact) +
2D Compatibility (PS) -25854 + (NN) -9896 + (LL) 1976
1D Compatibility (HY) -15600 + (ID) 3950
Total energy: -205947.0 ( -111.32 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_3QY9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QY9-query.scw
PDB file :
Tito_Scwrl_3QY9.pdb
: