Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIGIVGTNSNKSTNRQLLQYMQQHFADKAEIELIEVKDLPLFNKPADKNVPQVILDIAAKIEEADGVIIGTPEYDHSIPSALMSVLAWLS--------YGIYPLLNKPVMITGASYGTLGSSRAQLQLRQILNAPE-LKASVLPDEFLLSHSLQAFDKDGNLHDIETSQKLDAIFDDFRLFVKITGKLSNARDLLQKEAENFDWESL
3FVW Chain:A ((3-184))
KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANG----AEVFEDYRSLLPFIRMHLVDQLTGVPI---NSEAWSTGILKVSAEKLAELSAQADALLSAIEN-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3FVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71598 for 1260 contacts (-56.8/contact) +
2D Compatibility (PS) -18235 + (NN) -7890 + (LL) 1700
1D Compatibility (HY) -5200 + (ID) 1800
Total energy: -103023.0 ( -81.76 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_3FVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FVW-query.scw
PDB file :
Tito_Scwrl_3FVW.pdb
: