Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRPDNEPARLRSVAENLAAEAAAFVRGRRAEVFGISRAGDGDGAVRAKSSPTDPVTVVDTDTERLLRDRLAQLRPGDPILGEEGGGPADVT-------------------------------------------------ATPSDRVTWVLDPIDGTVNFVYGIPAYAVSIGAQVGGITVAGAVADVAA----------------RTVYSAATGLGAHLTDERGR---HVLRCTGVDELSMALLGTGFGYSVRCREKQAELLAHVVPLVRDVRRIGSAALDLCMVAAGRLDAYYEH------GVQVWDCAAGALIAAEAGARVLLST-PRAGGAG-------LVVVA-A-APGIADELLAALQRFNGLEPIPD |
| 1KA1 Chain:A ((2-351)) | ------ALERELLVATQAVRKASLLTKRIQSEV--I-S--HKDSTTITK-NDNSPVTTGDYAAQTIIINAIKSNFPDDKVVGEESSSGLSDAFVSGILNEIKANDEVYNKNYKKDDFLFTNDQFPLKSLEDVRQIIDFGNYEGGRKGRFWCLDPIDGTKGFLRGE-QFAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDLKGHESFGYIFRAVRGLGAFYSPSSDAESWTKIHVRHLKDTKDMITLEGVEKGHSSHDEQTAIKNKL-NI-SKSLHLDS-QAKYCLLALGLADVYLRLPIKLSYQEKIWDHAAGNVIVHEAGGIHTDAMEDVPLDFGNGRTLATKGVIASSGPRELHDLVVSTSCDV-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KA1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168849 for 2325 contacts (-72.6/contact) +
2D Compatibility (PS) -29859 + (NN) -23039 + (LL) 204
1D Compatibility (HY) -7200 + (ID) 2950
Total energy: -231693.0 ( -99.65 by residue)
QMean score : 0.472
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