Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGA--PYNDNNYNIDLKARCQ
1GMZ Chain:A ((1-116))
DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKL---TSCKPKTDRYSYSRKDGTIVCG-E-DPCRKEICECDKAAAVCFRENLDTYNKKYMSYLKS-LCK
General information:
TITO was launched using:
RESULT:
Template:
1GMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63097 for 824 contacts (-76.6/contact) +
2D Compatibility (PS) -12245 + (NN) -8833 + (LL) 264
1D Compatibility (HY) -8400 + (ID) 2200
Total energy: -94511.0 ( -114.70 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1GMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GMZ-query.scw
PDB file :
Tito_Scwrl_1GMZ.pdb
: