Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKT-GKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEKRGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNK-FCKGKTPSC
3V9M Chain:A ((1-118))
---------------------NLIQFGNMIQCANKGSRPSLDYADYGCYCGWGGSGTPVDELDRCCQVHDNCYEQAGKKGCFPKLTLYSWKCTGNVPTCN-SKPGCKSFVCACDAAAAKCFAKA--PYKKENYNIDTKKRCK------
General information:
TITO was launched using:
RESULT:
Template:
3V9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40050 for 903 contacts (-44.4/contact) +
2D Compatibility (PS) -12512 + (NN) -7407 + (LL) 2660
1D Compatibility (HY) -7600 + (ID) 2300
Total energy: -67209.0 ( -74.43 by residue)
QMean score : 0.242
(partial model without unconserved sides chains):
PDB file :
Tito_3V9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9M-query.scw
PDB file :
Tito_Scwrl_3V9M.pdb
: