Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNAAAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQ----FDRIKTLGTG-SFGRVMLVKHKES-GNHYAMKILDKQKVVKL-KQIEHTLNEKRILQ--AVNFPFLVKLEFSFKDNS-NLYMVMEYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLID-QQGYIQVTDFGFAKRV----KGRTWTLCGTPEYLAPEIILSK---GYNKAVDWWALGVLIYEMAAGY-PPFFADQP--IQIYEKIVSG------KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTD---WIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIR---VSINEKCGKEFTEF |
| 1CDK Chain:A ((8-350)) | --------KGSEQESVKEFLAKAKEDFLKKWENPAQNTA----HLDQFERIKTLGT-GSFGRVMLVKHKETG-NHFAMKILDKQKVVK-LKQIEHTLNEKRILQAV--NFPFLVKLEYSFKDN-SNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRVKGRT----WTLCGTPEYLAPEIILS-KGY--NKAVDWWALGVLIYEMAAG-YPPFFAD--QPIQIYEKIVSGKVRFPS------HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSI---NEKCGKEFSEF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145058 for 2429 contacts (-59.7/contact) +
2D Compatibility (PS) -33280 + (NN) -16408 + (LL) 2216
1D Compatibility (HY) -46400 + (ID) 14950
Total energy: -253880.0 ( -104.52 by residue)
QMean score : 0.692
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