Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
1I4D Chain:D ((2-136))
-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP
General information:
TITO was launched using:
RESULT:
Template:
1I4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64669 for 947 contacts (-68.3/contact) +
2D Compatibility (PS) -14676 + (NN) -10506 + (LL) 208
1D Compatibility (HY) -19600 + (ID) 5100
Total energy: -114343.0 ( -120.74 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_1I4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I4D-query.scw
PDB file :
Tito_Scwrl_1I4D.pdb
: