Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRRITLNSNFMFGASDIKSLPNESAPEIAFAGRSNVGKSSLINLLINSKKAARVSSKPGCTRQINFYSMYNDKFRLVDLPGYGCSHASKDETIQYLGLVEYYLIHRRNLRRVFVLIDSKVRLKEIDKDFIYWLTYNNINFDVVLTKIDKVDRENLDAIIESTRKWINNE-SVSIRQISVRVKYEMTKVRDEFFKFTR
1SVI Chain:A ((17-193))
-------------------QYPEGGLPEIALAGRSNVGKSSFINSLINR-------------QTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN
General information:
TITO was launched using:
RESULT:
Template:
1SVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109487 for 1265 contacts (-86.6/contact) +
2D Compatibility (PS) -17232 + (NN) -2792 + (LL) 2056
1D Compatibility (HY) -8800 + (ID) 2750
Total energy: -139005.0 ( -109.89 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_1SVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVI-query.scw
PDB file :
Tito_Scwrl_1SVI.pdb
: