Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MYKLIKPFLFKIEPEKAHGLTIDALKTLQKFPVLFPVVDKLFTYKNPTLSQTIQGNTYDNPIGLAAGF-DKSCEVPKALEHLG-FGALELGGITPKPQP--GNPQPRMFRLLEDD-ALINRMGFNNIGMNKAL--------SHLRKNAYQVPVGINVGVNKMTPYEARYQDYIKVIDTFKHDVSFFTVNISSPNTENLQNFHDKDEFSMLCQALTTFKKQ--HDVTVPIYLKLTSDMDFDGLKALLPAITET-FDGIILANTTRQRDGLT-----SANKVEEGGLSGRPLFERNLKLIKYAYQQTNGEFLIIGTGGVFSTEDAIKMMRHGASLIQIYSSLVIEGPGLTKKMNKGIARYLKDHHFDNVSDIIGLDA-- |
| 1D3G Chain:A ((1-367)) | MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSL-----------GLLPFQDSDMLEVRVLGHKFRNPVGIAAG-FDKHGEAVDGLYKM-GFGFVEIGSVTPK--PQEGNPRPRVFRLPED-QAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV--DAAEDYAEGVRVLGPLADYLVVNVSSPNTA----GLGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTV-SRPA-GLQGA--LRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1D3G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119410 for 2953 contacts (-40.4/contact) +
2D Compatibility (PS) -35726 + (NN) -24367 + (LL) 1580
1D Compatibility (HY) -14400 + (ID) 5600
Total energy: -197923.0 ( -67.02 by residue)
QMean score : 0.520
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