Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFLNDHINVFGLIAALVILVLTIYESSSLIKEMRDSKSQGELMENGHLIDGIGEFANNVPVGWIASFMCVIVWAFWYFFFGYPLSSFSQIGQYNEEVKAHNQKFEAKWKHLGQKELVDMGQGIFLVHCSQCHGITADGLHGSAQNLLRWDKEEGIMDTIKHGSKGMDYPAGEMPAIEMD-EKDAKAIASYVMAELSSVKKT----------KNPQLIDKGKELFESMGCAGCHGNDGKGLQENQ-V-------------------------------FAADLTTYG---------TESFLRNILTHGKKGNIGRMPSFKYKNFSDLQVKALVEFIKSLKPLED |
| 2VHD Chain:A ((147-303)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSFDNMALAIEAYEAT-LVTPDSPFDLYLKGDDKALDAQQKKGLKAFMDSGCSACHNGINLGGQAYFPFGLVKKPDASVLPSGDKGRFAVTKTQSDEYVFRAAPLRNVALTAPYFHSGQVWELKDAVAIMG----NAQLG---KQLAPDDVENIVAFLHSLSGKQP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VHD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5853 for 686 contacts (-8.5/contact) +
2D Compatibility (PS) -11110 + (NN) -6841 + (LL) 12480
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: -14524.0 ( -21.17 by residue)
QMean score : 0.318
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