Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSTHGLLNKEVRYSNGKLIIGSLEIPVFNSIKDLK------GVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNH-FLYQNQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTLE-NMVKIMGWYDNEWGYSNRLVDMAQFMYHY |
| 3L0D Chain:B ((24-349)) | VRVAINGFGRIGRNILRAIIESGRQD--IEVVALNDLGSVETNAHLLRYDSVHGCFPGTVQVVGDAIDI---LIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKRVLVSAP-----SEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGFMTTIHSYTGDQPVLDTMH-RDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPTPNVSVVDLTFTAKRSTTIEEINTAIRTAAQGSLKGILDYTDEKLVSCDFNHNPHSAIFHNDQTKVIDGQLCRVLVWYDNEWGFSNRMCDTAVAFAKT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3L0D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206790 for 2728 contacts (-75.8/contact) +
2D Compatibility (PS) -33023 + (NN) -4782 + (LL) 180
1D Compatibility (HY) -23200 + (ID) 6800
Total energy: -274415.0 ( -100.59 by residue)
QMean score : 0.484
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