Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLFDYAPLSLAWREFLQSEFKKPYFLEIEKRYLEALKS-PKTIFPKSSNLFCAFNLTPPYAVKIILLGQDPYHSTYLENEQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAKRGMLLLNAILSVEKNQAASHKYIGWEAFSDQILIRLFETTTPLIVVLLGKVAQKKIALIPKNKHIIITAPHPSPLSRG--FLGSGVFTSVQKAYREVYRKDFDFSL
3UF7 Chain:A ((3-222))
--------NELTWHDVLAEEKQQPYFLN-TLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPG--------QAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDWMP
General information:
TITO was launched using:
RESULT:
Template:
3UF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145301 for 1753 contacts (-82.9/contact) +
2D Compatibility (PS) -23206 + (NN) -12256 + (LL) 1368
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -199145.0 ( -113.60 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_3UF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UF7-query.scw
PDB file :
Tito_Scwrl_3UF7.pdb
: