Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATYFVMRKAGSNAGHPPAEMFELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSIITLILGAGFVGFELYEFAHYVTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN
2YEV Chain:A ((597-791))
-ALEDEYSHPVEHHTVTGKSNAWMGMAWFIVSEVGLFAILIAGYLYLRLSG-AATPPEE-RPALWLALLNTFLLVSSSFTVHFAHHDLRRGRFNPFRFGLLVTIILGVLFFLVQSWEFYQFYHH-SSWQENLWTAAFFTIVGLHGLHVVIGGFGLILAYLQALRGKITLHNHGTLEAASMYWHLVDAVWLVIVTIFYVW----
General information:
TITO was launched using:
RESULT:
Template:
2YEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183195 for 1430 contacts (-128.1/contact) +
2D Compatibility (PS) -19770 + (NN) -6195 + (LL) 260
1D Compatibility (HY) -19200 + (ID) 2950
Total energy: -231050.0 ( -161.57 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_2YEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YEV-query.scw
PDB file :
Tito_Scwrl_2YEV.pdb
: