Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFSIGEFSELVGIPSSTLRFYEKEGLITPD-RDKNNLRTYSEEDANWLKFLLHLKGAGLSIEELKQYTIWRTAGDSTISERLNMLKEKKIVLEQEIENLQKDLDTVVRKIGIYEEKVAKLDV
3HH0 Chain:A ((1-116))
LAWLISEFASVGDVTVRALRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGFSLGEIQNIILQRDIE---TEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEER----
General information:
TITO was launched using:
RESULT:
Template:
3HH0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27444 for 630 contacts (-43.6/contact) +
2D Compatibility (PS) -12108 + (NN) -5811 + (LL) 412
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -50451.0 ( -80.08 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_3HH0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HH0-query.scw
PDB file :
Tito_Scwrl_3HH0.pdb
: