Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKWKRDHLGMVMGILNVTPDSFSDGGKYMQVEEAVARALQMAEDGAAIIDVGGISTRPGFSEVTPDEELARIIPVIKAVRTKLPDIWISVDSWRAEVAEQAILAGADMINDQWGAKKEPKIAEVAAKYDVPICLMH--NRENAQYDNFLEDVKKDLLESIAIAKAASVPDEHIILDPGFGFVKTPAQNLEVLRRIDEIVALGYEVLLGTSRKSTIGLVLGTT-PGDRMEGTGATTVYGFSKGCTITRVHDVLPIARMVRMTDAITGKLDITNL
2DZB Chain:B ((31-272))
-----------LLGVLNLTPD----------PERALERAREMVAEGADILDLGAEST-------PVEEEKRRLLPVLEAVLSL--GVPVSVDTRKPEVAEEALKLGAHLLNDVTGLRDE-RMVALAARHGVAAVVMHMP--AHARYRDVVAEVKAFLEAQARRALSAGVP--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVEDPAQRVHGSVAAHLFAVMKGVRLLRVHDV----------------------
General information:
TITO was launched using:
RESULT:
Template:
2DZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133585 for 1772 contacts (-75.4/contact) +
2D Compatibility (PS) -23798 + (NN) -16786 + (LL) 2988
1D Compatibility (HY) -16800 + (ID) 4700
Total energy: -192681.0 ( -108.74 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2DZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DZB-query.scw
PDB file :
Tito_Scwrl_2DZB.pdb
: