Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLCTISDSQALLEVSYKTFDETFRAQNKPENMDAYLKTNFTAKKLSDELKNPHSYFYFVFHQEAIAGYLKLNIGDAQTEEIAGNTIEIERIYVLKSFQKKGLGKELFNQAIEIAKEVDAKKIWLGVWEKNKNAIQFYAKLGFIKNGQHDFFMGDDCQTDIIMIKDL
3FNC Chain:A ((7-148))
HIRKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKRFYNVETLHNRI--SATPFAVLEQADKVIGFANFIELE-------KGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHV--PLPMFVNVEKGNETAIHFYKAKGFVQVEEFTED---------------
General information:
TITO was launched using:
RESULT:
Template:
3FNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82530 for 995 contacts (-82.9/contact) +
2D Compatibility (PS) -15191 + (NN) -3792 + (LL) 1992
1D Compatibility (HY) -7600 + (ID) 1450
Total energy: -108571.0 ( -109.12 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3FNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNC-query.scw
PDB file :
Tito_Scwrl_3FNC.pdb
: