Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LQNYSKSEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKGAYITDVDGNEYIDYVLSWGPLILGHTDPAVVNAITKAA--LKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTK------REKILKFEGSYHGHGDSLLIKAGSGVATLGLPDSPGVTKGLA---ADTITVPYNDIEGAKLAFEKYGEEIAAVIVEPVAGNMGVVPPIEGFLEGLRELTTKFGSLLIFDEVMTGF-RVDYYSAQGYYVVTPDLTCLGKVIGGGLPVGAYGGKKEIME--QIAPAGSIYQAGTLSGNPLAM---NAGFETVRQLTPQHYDVFRTLIKRMEEGLTEISARRQVPLSINKAGSMFGFFFTDQKVINFDTAKTSNLEFFRNYYREMLGQGIFLPPSQFEGVFISTMHTENEIDKTLEAFDTTCKILRG |
| 2PB2 Chain:A ((46-358)) | -----------------------------------------GKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGR--SLF--------TVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAF----HGSTY-----GGNPLACAVAGAAFDIIN--TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIG----------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2PB2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -125361 for 2434 contacts (-51.5/contact) +
2D Compatibility (PS) -32088 + (NN) -15631 + (LL) 8212
1D Compatibility (HY) -16000 + (ID) 5350
Total energy: -186218.0 ( -76.51 by residue)
QMean score : 0.494
|
|
|