Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDKIAVIPGTFDPITNGHLDIIERAAKIFDVLYVSVLNNSSKKPLFTIEERMEMIRQVTAHLPNVQV-ESASGLTVDYAATRGATAIVRGLRAVSDFEYEMQIASMNRTLNADIETFFVMTNTKYSFLSSSMVKEVAQYQGDISELVPEIVNKAVQAKFK
3ND6 Chain:F ((3-158))
---KIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK--
General information:
TITO was launched using:
RESULT:
Template:
3ND6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103432 for 1123 contacts (-92.1/contact) +
2D Compatibility (PS) -16391 + (NN) -6919 + (LL) 8
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -146534.0 ( -130.48 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3ND6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND6-query.scw
PDB file :
Tito_Scwrl_3ND6.pdb
: