Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VSLEEALLFREATVTDLKSIMNVENAAFT---VPWT-----EAAFRNEFI--INQYAYYLLAIYKEQVVGYAGVWLVL-----DEGHITNIAIHPDYQGNHYGEALLREMIRVAKERGVVRMTLEVRVSNDVAQGLYKKLGFQDGAIRKNYYPDT--KEDALVMWVDL
3DR6 Chain:A ((3-164))
-----AMTIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYEARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVMVAGIESQNAASIRLHHSLGFTVTAQMPQVGVKFGRWLDLTFMQLQ-
General information:
TITO was launched using:
RESULT:
Template:
3DR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100935 for 1032 contacts (-97.8/contact) +
2D Compatibility (PS) -15670 + (NN) -5552 + (LL) 724
1D Compatibility (HY) -1200 + (ID) 1550
Total energy: -124183.0 ( -120.33 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3DR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DR6-query.scw
PDB file :
Tito_Scwrl_3DR6.pdb
: