Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLQETIGIEIVSVEKGKAVVQLEVTEKVHQPFGYLHGGVSVVLAEHAASIGAAKSIEPDEIVFGLEINANHLASKQAGLVTATAEAIHIGKSTQVWEIKITDETEKLLCISRCTIAVKKKRK
1VH5 Chain:A ((18-137))
GNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAILE---
General information:
TITO was launched using:
RESULT:
Template:
1VH5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73250 for 880 contacts (-83.2/contact) +
2D Compatibility (PS) -12333 + (NN) 2745 + (LL) 228
1D Compatibility (HY) -8000 + (ID) 2250
Total energy: -92860.0 ( -105.52 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1VH5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VH5-query.scw
PDB file :
Tito_Scwrl_1VH5.pdb
: