Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAIT-------TVLAKKGYADAQAYDQIDGAPEERERGITISTAHVEYQTDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKCDMVD-DEELLELVEMEIRDLLTEYEFPGDDIPVIKGSALKA-----LQGEADWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVV-------VTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAK----PGSITPHTNFKAETYVLTKEEGGR--HTPFFNNYRPQFYFRTTDVTGIV------TLPEGTEMVMPGDNIELAVELIAPIAIEDGT------KFSIREGGRTVGAGVVSNISK |
| 3WYA Chain:A ((5-426)) | ---------KPHVNIVFIGHVDHGKSTTIGRLLYDTGNIP--------KFAWVMDRLK---EE----------HTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMPQTKEHAFLARTLGIKHIIVTINKMDMVNYDQKVFEKVKAQVEKLLKTLGY--KDFPVIPTSAWNGDNVVKKSDKMPWYNG-PTLIEALDQ-IPEPEKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVV----IFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143755 for 2869 contacts (-50.1/contact) +
2D Compatibility (PS) -38583 + (NN) -15170 + (LL) 2228
1D Compatibility (HY) -29200 + (ID) 7350
Total energy: -231830.0 ( -80.81 by residue)
QMean score : 0.466
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