Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQFAVDFIEASREEASAILEFLNTVTEE-TDFILHTVSNQLSLSEMETFIENTLM---TKNCICLIAKLKNKVIGLITIISQSDIEIEHVGDLFIAVQKDYWGYGIGHILMEEAIEWASDNDITRRLELSVQGRNERAIHLYQKFGFEIDGLQTRGIKRENGEFLDIYRMSKLID
3R9F Chain:A ((18-187))
--VNDEITLLYPALKYAEELYLLINQNKINFIKSMAWPAFV-NNISDSVSFIEQSMIDNQNEKALILFIKYKTKIAGVVSFNIID--HANKTAYIGYWLGANFQGKGIVTNAINKLIQEYGDSGVIKRFVIKCIVDNKKSNATALRCGFTLEGVLQKAEI-LNGVSYDQNIYSKVI-
General information:
TITO was launched using:
RESULT:
Template:
3R9F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103297 for 1211 contacts (-85.3/contact) +
2D Compatibility (PS) -17529 + (NN) -25 + (LL) 452
1D Compatibility (HY) -6400 + (ID) 1350
Total energy: -128149.0 ( -105.82 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3R9F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9F-query.scw
PDB file :
Tito_Scwrl_3R9F.pdb
: