Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRLVKIVTIIRNNKIRTLIFVMGSLILLFPIVSQVSYYLASHQNINQFKREVAKIDTNTVERRIALANAYNETLSRNPLLIDPFTSKQKEGLREYARMLEVHEQIGHVAIPSIGVDIPIYAGTSETVLQKGSGHLEGTSLPVGGLSTHSVLTAHRGLPTARLFTDLNKVKKGQIFYVTNIKETLAYKVVSIKVVDPTALSEVKIVNGKDYITLLTCTPYMINSHRLLVKGERIPYDSTEAEKHKEQTVQDYRLSLVLKILLVLLIGLFIVIMMRRWMQHRQ
3G66 Chain:A ((5-199))
----------------------------------------------IKEFDETVSQMDKAELEERWRLAQAFNATLKPSEIL-DPFT-------SEYANMLKVHERIGYVEIPAIDQEIPMYVGTSEDILQKGAGLLEGASLPVGGENTHTVITAHRGLPTAELFSQLDKMKKGDIFYLHVLDQVLAYQVDQIVTVEPNDFEPVLIQHGEDYATLLTCTPYMINSHRLLVRGKRIPYTAPI------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3G66.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104288 for 1465 contacts (-71.2/contact) +
2D Compatibility (PS) -20127 + (NN) -6817 + (LL) 10548
1D Compatibility (HY) -21600 + (ID) 5400
Total energy: -147684.0 ( -100.81 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_3G66.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G66-query.scw
PDB file :
Tito_Scwrl_3G66.pdb
: