Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MTNTVTPKETAGSFINKVLGGTATAIVVALIPNAILATFLKPFLSYGLAAEFLHIVQVFQFFTPIMAGFLIGQQFKFTPMQQLAVGGAAYIGSGAWAYTEVIQKGVATGSFQLRGIGDLINMM---LTAALAVLAVKWFGNKFGSLTIILLPIIIGT----GVGYLG---------WKLLPYVSYVTTLIGQGINSFTTLQPIAMSILIAMAFSMLIVSPISTVAIGLAIGLNGMSASAASMGVASTTAVLVWATMKANKSGVPIAIALGAMKMMMPNFLKHPVMAIPMLMTATVSSLTVPLFKLVGTP------ASSGFGLVGAVGP----IASFEAGASMLIVILSWLVIPFAVGFVSHKICKDILKLYKDDIFVFEGQN----- |
| 4R33 Chain:A ((35-418)) | GDFVLPELEDVRAEAATVDTRAVLALAEGEEPAESRAAVALALWEDRSIG---TAELQAAAEARCGARRPRLHTFVPLYTTNYCDSECKMCSMRK-GNHRLDRKFSGRKEITEQLEILYHHEG--VRGVGFLTGEYEDKHTRLASAFRIGWAIRTALDLGFERVYFNIGSMEQDEIDVLGEWIGREDPVTMCVFQESYDRETYRRFMGKTSVGVPKADFDRRVVSFDRWLDAGYRYVNPGVLVGLHD--------DLSAELVSLVAHGDHLRSRGATADLSVPRMRPAMKSRDTTRVGDDDYLRLMSVVAFTCPEQRLVLTTREPQEFQDVALGLAGVISPGSPDVAPYRAGCEARNDEKSS-QFLVADLRRPRHILGRIEA-SGTPVDHFVNPAGEASR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R33.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -331675 for 2821 contacts (-117.6/contact) +
2D Compatibility (PS) -34891 + (NN) 2730 + (LL) 1904
1D Compatibility (HY) 0 + (ID) 3000
Total energy: -364932.0 ( -129.36 by residue)
QMean score : 0.242
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