Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKLTVKDVDLKGKKVLVRVDFNVPLKDGVITNDNRITAALPTIKYIIEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVV-FPGVTRGAKLEEAINALEDGQVLLVENTRFEDVDG---KKESKNDEELGKYWASLGDGIFVNDAFGTAHRAHASNVGISANVEKAVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLEK--ADKVLIGGGMTYTFYKAQGIEIGNSLVEE-------DKLDVAKDLLEKSNGK-LILPVDSKEANAFAGYTEVR-DTEGEAVSEGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQAGTIGVMDAIVKQLGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPGLAALTEK |
2CUN Chain:A ((1-401)) | --MFRLEDFNFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPYSE---DYTTTEEHARVLSELLDQHVEYIED-IFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVID-YVVNDAFATAHRSQPSLVGFARIKP-MIMGFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHAEEILDEF-YPYIRTPVDFAVDYKGERV-EIDLLSENRGLLHQYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIADS-PAFSVLGGGHSIASIQKYGI-TGITHISTGGGAMLSFFAGEELPVLRALQIS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CUN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -154660 for 3533 contacts (-43.8/contact) +
2D Compatibility (PS) -41577 + (NN) -12201 + (LL) 860
1D Compatibility (HY) -25600 + (ID) 6850
Total energy: -240028.0 ( -67.94 by residue)
QMean score : 0.563
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